Ontology for Biomedical Investigations

Last uploaded: January 23, 2019
Preferred Name

SOLiD sequencing assay

Definitions

A DNA sequencing by ligation assay that identifies sequence information using primers to hybridize to the P1 adapter sequence within the library template, fluorescently labeled di-base probes to compete for ligation to the sequencing primer, multiple cycles of ligation, detection and cleavage to determine the eventual read length, following a series of ligation cycles, the extension product is removed and the template is reset with a primer complementary to the n-1 position for a second round of ligation cycles.

ID

http://purl.obolibrary.org/obo/OBI_0000706

definition source

url:https://en.wikipedia.org/wiki/ABI_Solid_Sequencing

editor preferred label

SOLiD sequencing assay

example of usage

PMID: 19119315. High-resolution analysis of the 5'-end transcriptome using a next generation DNA sequencer. Hashimoto S, Qu W, Ahsan B, Ogoshi K, Sasaki A, Nakatani Y, Lee Y, Ogawa M, Ametani A, Suzuki Y, Sugano S, Lee CC, Nutter RC, Morishita S, Matsushima K. PLoS One. 2009;4(1):e4108.

has curation status

http://purl.obolibrary.org/obo/IAO_0000120

label

SOLiD sequencing assay

prefixIRI

OBI:0000706

prefLabel

SOLiD sequencing assay

term editor

Philippe Rocca-Serra

textual definition

A DNA sequencing by ligation assay that identifies sequence information using primers to hybridize to the P1 adapter sequence within the library template, fluorescently labeled di-base probes to compete for ligation to the sequencing primer, multiple cycles of ligation, detection and cleavage to determine the eventual read length, following a series of ligation cycles, the extension product is removed and the template is reset with a primer complementary to the n-1 position for a second round of ligation cycles.

subClassOf

http://purl.obolibrary.org/obo/OBI_0000723

Delete Subject Author Type Created
No notes to display
Create New Mapping

Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/OBI_0000706 GenEpiO SAME_URI