Ontology of Genes and Genomes

Last uploaded: February 21, 2019
Preferred Name

entity

ID

http://purl.obolibrary.org/obo/BFO_0000001

BFO CLIF specification label

Entity

BFO OWL specification label

entity

editor note

BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81

Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf

elucidation

An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])

example of usage

the Second World War

Julius Caesar

Verdi’s Requiem

your body mass index

exists at

http://purl.obolibrary.org/obo/BFO_0000008

isDefinedBy

http://purl.obolibrary.org/obo/bfo.owl

label

entity

prefixIRI

BFO:0000001

prefLabel

entity

subClassOf

http://www.w3.org/2002/07/owl#Thing

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http://semanticscience.org/resource/SIO_000000 Semanticscience Integrated Ontology LOOM
http://www.semanticweb.org/ontologies/2009/3/ontoDPN.owl#Entitee Early Pregnancy Ontology LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C51070 National Cancer Institute Thesaurus LOOM
http://purl.obolibrary.org/obo/BFO_0000001 Basic Formal Ontology LOOM
http://purl.obolibrary.org/obo/BFO_0000001 Basic Formal Ontology SAME_URI
http://purl.obolibrary.org/obo/BFO_0000001 Ontology for General Medical Science LOOM
http://purl.obolibrary.org/obo/BFO_0000001 Ontology for General Medical Science SAME_URI
http://purl.obolibrary.org/obo/BFO_0000001 International Classification of Diseases Ontology LOOM
http://purl.obolibrary.org/obo/BFO_0000001 International Classification of Diseases Ontology SAME_URI
http://purl.obolibrary.org/obo/BFO_0000001 GenEpiO LOOM
http://purl.obolibrary.org/obo/BFO_0000001 GenEpiO SAME_URI
http://purl.obolibrary.org/obo/BFO_0000001 Information Artifact Ontology LOOM
http://purl.obolibrary.org/obo/BFO_0000001 Information Artifact Ontology SAME_URI
http://purl.obolibrary.org/obo/BFO_0000001 Cell Line Ontology Subset for Chinese National Infrastructure of Cell Line Resource (NICR) LOOM
http://purl.obolibrary.org/obo/BFO_0000001 Cell Line Ontology Subset for Chinese National Infrastructure of Cell Line Resource (NICR) SAME_URI
http://purl.obolibrary.org/obo/BFO_0000001 Cell Line Ontology (Chinese Translation) SAME_URI
http://purl.obolibrary.org/obo/BFO_0000001 Basic Formal Ontology(Chinese translation) SAME_URI
http://purl.obolibrary.org/obo/BFO_0000001 Evidence and Conclusion Ontology LOOM
http://purl.obolibrary.org/obo/BFO_0000001 Evidence and Conclusion Ontology SAME_URI
http://purl.obolibrary.org/obo/BFO_0000001 Ontology for Biomedical Investigations LOOM
http://purl.obolibrary.org/obo/BFO_0000001 Ontology for Biomedical Investigations SAME_URI
http://purl.obolibrary.org/obo/BFO_0000001 Informed Consent Ontology LOOM
http://purl.obolibrary.org/obo/BFO_0000001 Informed Consent Ontology SAME_URI
http://purl.obolibrary.org/obo/BFO_0000001 Environment Ontology LOOM
http://purl.obolibrary.org/obo/BFO_0000001 Environment Ontology SAME_URI
http://purl.bioontology.org/ontology/STY/T071 MedlinePlus Health Topics LOOM
http://purl.bioontology.org/ontology/STY/T071 Logical Observation Identifier Names and Codes LOOM
http://purl.bioontology.org/ontology/STY/T071 International Classification of Diseases, Version 10 - Clinical Modification LOOM
http://purl.bioontology.org/ontology/STY/T071 Medical Subject Headings LOOM
http://purl.bioontology.org/ontology/STY/T071 Online Mendelian Inheritance in Man LOOM
http://purl.bioontology.org/ontology/STY/T071 Semantic Types Ontology LOOM