Cell Ontology

Last uploaded: February 23, 2022
Preferred Name

substantia nigra

Synonyms

SN

nucleus of basis pedunculi

substantia nigra (Soemmerringi)

nucleus pigmentosus subthalamo-peduncularis

substancia nigra

Soemmering's substance

Definitions

Predominantly gray matter midbrain structure lying dorsal to the crus cerebri and ventral to the midbrain tegmentum. It is divided into a dorsal, cellularly compact region known as the pars compacta and a more ventrally located, containing more loosely packed cells, the pars reticulata. The most lateral region of the reticulata is identified as the pars lateralis (MM).

ID

http://purl.obolibrary.org/obo/UBERON_0002038

contributes to morphology of

http://purl.obolibrary.org/obo/UBERON_0010011

http://purl.obolibrary.org/obo/UBERON_0001891

database_cross_reference

Wikipedia:Substantia_nigra

UMLS:C1269578

GAID:581

FMA:67947

BTO:0000143

EFO:0000922

EHDAA2:0004711

VHOG:0001573

EMAPA:35835

MESH:A08.186.211.132.659.687

BAMS:SN

http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=536

NCIT:C12453

EV:0100247

DHBA:12251

CALOHA:TS-0990

MA:0000210

UMLS:C0038590

SCTID:279286002

HBA:9072

MAT:0000504

BIRNLEX:789

definition

Predominantly gray matter midbrain structure lying dorsal to the crus cerebri and ventral to the midbrain tegmentum. It is divided into a dorsal, cellularly compact region known as the pars compacta and a more ventrally located, containing more loosely packed cells, the pars reticulata. The most lateral region of the reticulata is identified as the pars lateralis (MM).

depicted by

http://upload.wikimedia.org/wikipedia/commons/5/5f/Midbraincrosssection.png

editor note

TODO - In BTO and NIF, part of basal ganglion which is part of telencephalon - but this is inconsistent with being part of midbrain, if these are spatially disjoint, as in ABA

has_broad_synonym

SN

has_exact_synonym

nucleus of basis pedunculi

Soemmering's substance

has_obo_namespace

uberon

has_related_synonym

substantia nigra (Soemmerringi)

nucleus pigmentosus subthalamo-peduncularis

substancia nigra

id

UBERON:0002038

in_lateral_side_of

http://purl.obolibrary.org/obo/UBERON_0001891

in_subset

http://purl.obolibrary.org/obo/uberon/core#uberon_slim

http://purl.obolibrary.org/obo/uberon/core#pheno_slim

http://purl.obolibrary.org/obo/uberon/core#efo_slim

label

substantia nigra

notation

UBERON:0002038

part_of

http://purl.obolibrary.org/obo/UBERON_0002420

prefLabel

substantia nigra

treeView

http://purl.obolibrary.org/obo/UBERON_0002420

UBPROP_0000001

Subdivision of the midbrain anterior to the midbrain tegmentum which contains darkly pigmented neurons[FMA][FMA:67947].

UBPROP_0000003

(...) the substantia nigra first appears in reptiles and is best developed in primates.[well established][VHOG]

subClassOf

http://purl.obolibrary.org/obo/UBERON_0009661

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Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/BTO_0000143 BRENDA Tissue and Enzyme Source Ontology LOOM
http://purl.bioontology.org/ontology/MESH/D013378 Medical Subject Headings LOOM
http://purl.obolibrary.org/obo/FMA_67947 Foundational Model of Anatomy LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C12453 National Cancer Institute Thesaurus LOOM
http://purl.obolibrary.org/obo/UBERON_0002038 Human Phenotype Ontology China LOOM
http://purl.obolibrary.org/obo/UBERON_0002038 Human Phenotype Ontology China SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002038 Uber Anatomy Ontology LOOM
http://purl.obolibrary.org/obo/UBERON_0002038 Uber Anatomy Ontology SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002038 Environment Ontology LOOM
http://purl.obolibrary.org/obo/UBERON_0002038 Environment Ontology SAME_URI