Uber Anatomy Ontology

Last uploaded: January 20, 2022
Preferred Name

cerebrospinal fluid

Synonyms

spinal fluid

liquor cerebrospinalis

CSF

cerebral spinal fluid

Definitions

A clear, colorless, bodily fluid, that occupies the subarachnoid space and the ventricular system around and inside the brain and spinal cord.

ID

http://purl.obolibrary.org/obo/UBERON_0001359

contains

http://purl.obolibrary.org/obo/UBERON_0014930

http://purl.obolibrary.org/obo/UBERON_0000315

database_cross_reference

FMA:20935

GAID:1181

ENVO:02000029

MAT:0000499

CALOHA:TS-0130

BTO:0000237

VHOG:0001278

UMLS:C0007806

NCIT:C12692

EV:0100311

MESH:A12.207.268

EFO:0000329

EHDAA2:0004441

MA:0002503

ZFA:0001626

TAO:0002184

http://en.wikipedia.org/wiki/Cerebrospinal_fluid

http://uri.neuinfo.org/nif/nifstd/birnlex_1798

http://linkedlifedata.com/resource/umls/id/C0007806

definition

A clear, colorless, bodily fluid, that occupies the subarachnoid space and the ventricular system around and inside the brain and spinal cord.

develops_from

http://purl.obolibrary.org/obo/UBERON_0002307

editor note

many sources state the CP as sole producer of CSF, but this is disputed [doi:10.1007/s11064-015-1581-6]

external_definition

Portion of organism substance that is a clear fluid that occupies the subarachnoid space and the ventricular system around and inside the brain.[TAO]

external_ontology_notes

the FMA def states that this is subarachnoid spaces only. ZFA def states subarachnoid spaces and brain ventricles, but not SC (and has part_of to brain). Circulation: It circulates from the lateral ventricles to the foramen of Monro (Interventricular foramen), third ventricle, aqueduct of Sylvius (Cerebral aqueduct), fourth ventricle, foramen of Magendie (Median aperture) and foramina of Luschka (Lateral apertures), subarachnoid space over brain and spinal cord. It should be noted that the CSF moves in a pulsatile manner throughout the CSF system with nearly zero net flow. CSF is reabsorbed into venous sinus blood via arachnoid granulations.

EHDAA2 models this as developing from CP, which is wrong

filtered through

http://purl.obolibrary.org/obo/UBERON_0001886

has_exact_synonym

CSF

cerebral spinal fluid

has_obo_namespace

uberon

has_related_synonym

spinal fluid

liquor cerebrospinalis

homology_notes

In vertebrates, at early stages of Central Nervous System (CNS) development, the architecture of the brain primordium reveals the presence of the cavity of brain vesicles, which is filled by Embryonic Cerebro-Spinal Fluid (E-CSF). (...) Rat and chick E-CSF proteomes are similar, although rat is more complex in certain groups of proteins, e.g., apolipoproteins, which may be involved in the control of neural diversity, and has soluble enzymes present, just like adult human CSF, but unlike chick E-CSF, revealing phylogenetic brain differences between these groups of vertebrates.[uncertain][VHOG]

id

UBERON:0001359

in_subset

http://purl.obolibrary.org/obo/uberon/core#uberon_slim

http://purl.obolibrary.org/obo/uberon/core#pheno_slim

http://purl.obolibrary.org/obo/uberon/core#efo_slim

http://purl.obolibrary.org/obo/uberon/core#vertebrate_core

label

cerebrospinal fluid

located_in

http://purl.obolibrary.org/obo/UBERON_0005281

notation

UBERON:0001359

prefLabel

cerebrospinal fluid

treeView

http://purl.obolibrary.org/obo/UBERON_0002307

http://purl.obolibrary.org/obo/UBERON_0014930

http://purl.obolibrary.org/obo/UBERON_0000315

subClassOf

http://purl.obolibrary.org/obo/UBERON_0007779

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Delete Mapping To Ontology Source
http://purl.bmicc.cn/ontology/ICD11CN/XA1N55 International Classification of Diseases, 11th Edition, China LOOM
http://purl.obolibrary.org/obo/BTO_0000237 BRENDA Tissue and Enzyme Source Ontology LOOM
http://purl.bioontology.org/ontology/MESH/Q000134 Medical Subject Headings LOOM
http://purl.obolibrary.org/obo/UBERON_0001359 Human Phenotype Ontology China LOOM
http://purl.obolibrary.org/obo/UBERON_0001359 Human Phenotype Ontology China SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001359 International Classification of Diseases Ontology LOOM
http://purl.obolibrary.org/obo/UBERON_0001359 International Classification of Diseases Ontology SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001359 GenEpiO LOOM
http://purl.obolibrary.org/obo/UBERON_0001359 GenEpiO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001359 Cell Ontology LOOM
http://purl.obolibrary.org/obo/UBERON_0001359 Cell Ontology SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001359 Ontology for Biomedical Investigations LOOM
http://purl.obolibrary.org/obo/UBERON_0001359 Ontology for Biomedical Investigations SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001359 Informed Consent Ontology LOOM
http://purl.obolibrary.org/obo/UBERON_0001359 Informed Consent Ontology SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001359 Environment Ontology LOOM
http://purl.obolibrary.org/obo/UBERON_0001359 Environment Ontology SAME_URI
http://purl.obolibrary.org/obo/FMA_20935 Foundational Model of Anatomy LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C12692 National Cancer Institute Thesaurus LOOM
http://purl.bioontology.org/ontology/MESH/D002555 Medical Subject Headings LOOM