Uber Anatomy Ontology

Last uploaded: January 20, 2022
Preferred Name

midbrain

Synonyms

MB

mesencephalon

Definitions

The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO].

ID

http://purl.obolibrary.org/obo/UBERON_0001891

contributes to morphology of

http://purl.obolibrary.org/obo/UBERON_0000955

database_cross_reference

CALOHA:TS-0630

RETIRED_EHDAA2:0001104

UMLS:C0025462

VHOG:0000069

TAO:0000128

XAO:0000014

NCIT:C12510

FMA:61993

MBA:313

DHBA:10648

BM:MB

OpenCyc:Mx4rvsBUqpwpEbGdrcN5Y29ycA

BTO:0000138

http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=462

EHDAA:3694

MAT:0000106

MA:0000207

EFO:0000919

EHDAA2:0001162

MESH:D008636

DMBA:16649

ZFA:0000128

EV:0100242

HBA:9001

EMAPA:16974

AAO:0010149

BAMS:MES

MIAA:0000106

http://linkedlifedata.com/resource/umls/id/C0025462

http://www.snomedbrowser.com/Codes/Details/279099009

http://en.wikipedia.org/wiki/Midbrain

http://uri.neuinfo.org/nif/nifstd/birnlex_1667

http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=462

definition

The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO].

depicted_by

http://upload.wikimedia.org/wikipedia/commons/f/f9/Human_brain_inferior_view_description.JPG

develops_from

http://purl.obolibrary.org/obo/UBERON_0009616

editor note

developmental relationships need revised

external_definition

The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally. Kimmel et al, 1995.[TAO]

Middle part of the brain composed of the optic tectum and penducular region.[AAO]

external_ontology_notes

part of brainstem in ABA - we reject this in favor of ISBN10:0471888893 which has an implicit overlaps relationships

has developmental contribution from

http://purl.obolibrary.org/obo/UBERON_0003849

has_broad_synonym

MB

has_obo_namespace

uberon

has_related_synonym

mesencephalon

has_relational_adjective

mesencephalic

homology_notes

Fine structural, computerized three-dimensional (3D) mapping of cell connectivity in the amphioxus nervous system and comparative molecular genetic studies of amphioxus and tunicates have provided recent insights into the phylogenetic origin of the vertebrate nervous system. The results suggest that several of the genetic mechanisms for establishing and patterning the vertebrate nervous system already operated in the ancestral chordate and that the nerve cord of the proximate invertebrate ancestor of the vertebrates included a diencephalon, midbrain, hindbrain, and spinal cord.[well established][VHOG]

id

UBERON:0001891

immediate transformation of

http://purl.obolibrary.org/obo/UBERON_0009616

in_subset

http://purl.obolibrary.org/obo/uberon/core#uberon_slim

http://purl.obolibrary.org/obo/uberon/core#pheno_slim

http://purl.obolibrary.org/obo/uberon/core#efo_slim

http://purl.obolibrary.org/obo/uberon/core#vertebrate_core

label

midbrain

notation

UBERON:0001891

prefLabel

midbrain

treeView

http://purl.obolibrary.org/obo/UBERON_0009616

subClassOf

http://purl.obolibrary.org/obo/UBERON_0002616

http://purl.obolibrary.org/obo/UBERON_0010314

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