Phenotypic Quality Ontology

Last uploaded: March 1, 2022
Preferred Name

midbrain

Synonyms

mesencephalon

MB

Definitions

The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO].

ID

http://purl.obolibrary.org/obo/UBERON_0001891

contributes to morphology of

http://purl.obolibrary.org/obo/UBERON_0000955

database_cross_reference

NCIT:C12510

MBA:313

FMA:61993

SCTID:279099009

XAO:0000014

VHOG:0000069

TAO:0000128

UMLS:C0025462

RETIRED_EHDAA2:0001104

CALOHA:TS-0630

MIAA:0000106

AAO:0010149

BAMS:MES

EV:0100242

ZFA:0000128

EMAPA:16974

HBA:9001

EHDAA2:0001162

EFO:0000919

DMBA:16649

MESH:D008636

BIRNLEX:1667

BTO:0000138

OpenCyc:Mx4rvsBUqpwpEbGdrcN5Y29ycA

DHBA:10648

BM:MB

MA:0000207

MAT:0000106

EHDAA:3694

Wikipedia:Midbrain

http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=462

definition

The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO].

depicted_by

http://upload.wikimedia.org/wikipedia/commons/f/f9/Human_brain_inferior_view_description.JPG

editor note

developmental relationships need revised

has developmental contribution from

http://purl.obolibrary.org/obo/UBERON_0003849

has_broad_synonym

MB

has_obo_namespace

uberon

has_related_synonym

mesencephalon

id

UBERON:0001891

immediate transformation of

http://purl.obolibrary.org/obo/UBERON_0009616

in_subset

http://purl.obolibrary.org/obo/uberon/core#uberon_slim

http://purl.obolibrary.org/obo/uberon/core#pheno_slim

http://purl.obolibrary.org/obo/uberon/core#efo_slim

http://purl.obolibrary.org/obo/uberon/core#vertebrate_core

label

midbrain

notation

UBERON:0001891

prefLabel

midbrain

RO_0002171

http://purl.obolibrary.org/obo/UBERON_0001894

http://purl.obolibrary.org/obo/UBERON_0002028

UBPROP_0000001

The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally. Kimmel et al, 1995.[TAO]

Middle part of the brain composed of the optic tectum and penducular region.[AAO]

UBPROP_0000003

Fine structural, computerized three-dimensional (3D) mapping of cell connectivity in the amphioxus nervous system and comparative molecular genetic studies of amphioxus and tunicates have provided recent insights into the phylogenetic origin of the vertebrate nervous system. The results suggest that several of the genetic mechanisms for establishing and patterning the vertebrate nervous system already operated in the ancestral chordate and that the nerve cord of the proximate invertebrate ancestor of the vertebrates included a diencephalon, midbrain, hindbrain, and spinal cord.[well established][VHOG]

UBPROP_0000007

mesencephalic

UBPROP_0000012

part of brainstem in ABA - we reject this in favor of ISBN:0471888893 which has an implicit overlaps relationships

subClassOf

http://purl.obolibrary.org/obo/UBERON_0002616

http://purl.obolibrary.org/obo/UBERON_0010314

http://purl.obolibrary.org/obo/UBERON_0004121

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